FUSION
FUnctionality Sharing In Open eNvironments
Heinz Nixdorf Chair for Distributed Information Systems
 
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Dr. Ing. Alsayed Algergawy

PostDoc

Leutragraben 1, Jentower , 07743 Jena , Room: 21N01

+49(0)3641-946438

0000-0002-8550-4720

Research Area

  • Biodiversity informatics
  • (Big) Data integration
  • Schema and ontology matching
  • Ontology partitioning and modularization
  • Research data management
  • XML data clustering
  • Web service discovery

Publications

2021

Results of the Ontology Alignment Evaluation Initiative 2021
Mina Abd Nikooie Pour, Alsayed Algergawy, Florence Amardeilh, Reihaneh Amini, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Ian Harrow, Sven Hertling, Pascal Hitzler, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Franck Michel, Engy Nasr, Heiko Paulheim, Catia Pesquita, Jan Portisch, Catherine Roussey, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou:
OM@ISWC 2021
1.12.2021
BEXIS2: A FAIR-aligned data management system for biodiversity, ecology and environmental data
Javad Chamanara, Jitendra Gaikwad, Roman Gerlach, Alsayed Algergawy, Andreas Ostrowski and Birgitta König-Ries
Biodiversity Data Journal
5.11.2021
ISTMINER: Interactive Spatiotemporal Co-occurrence Pattern Extraction: A Biodiversity case study
Dina Sharafeldeen, Mohamed Bakli, Alsayed Algergawy and Birgitta König-Ries
Computer Science for Biodiversity (CS4BioDiversity) Workshop at INFORMATIK2021
27.9.2021
A Data-driven Approach for Core Biodiversity Ontology Development.
Nora Abdelmageed, Alsayed Algergawy, Sheeba Samuel, Birgitta König-Ries
Third International Workshop on Semantics for Biodiversity, co-located with ICBO, 2021 15.9.2021
Towards an Ontology Network for the reproducibility of scientific studies
Sheeba Samuel, Alsayed Algergawy, Birgitta König-Ries
JOWO Workshops 2021 13.9.2021
Towards Scientific Data Synthesis Using Deep Learning and Semantic Web
Alsayed Algergawy, Hamdi Hamed, Birgitta Koenig-Ries
The Semantic Web: ESWC 2021 Satellite Events: poster and demo
4.6.2021
BiodivOnto: Towards a Core Ontology for Biodiversity
Nora Abdelmageed, Alsayed Algergawy, Sheeba Samuel and Birgitta Koenig-Ries
The Semantic Web: ESWC 2021 Satellite Events: poster and demo
4.6.2021

2020

Ontology Based Natural Language Queries Transformation into SPARQL Queries
Majid Askar, Alsayed Agergawy, Taysir Hassan A. Soliman , Birgitta König-Ries , Adel A. SEWISY
Baltic Journal of Modern Computing (BJMC)
https://www.bjmc.lu.lv/ 21.12.2020
Results of the Ontology Alignment Evaluation Initiative 2020
Mina Abd Nikooie Pour, Alsayed Algergawy, Reihaneh Amini, Daniel Faria, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Clement Jonquet, Naouel Karam, Abderrahmane Khiat, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Pascal Hitzler, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vataščinová, Beyza Yaman, Ondřej Zamazal, Lu Zhou
Proceedings of the 15th International Workshop on Ontology Matching co-located with the 19th International Semantic Web Conference (ISWC 2020)
Virtual conference (originally planned to be in Athens, Greece) 2.11.2020
Ontology Modularization with OAPT
Alsayed Algergawy · Samira Babalou · Friederike Klan · Birgitta König-Ries
Journal on Data Semantics
1.10.2020
Towards a Core Ontology for Hierarchies of Hypotheses in Invasion Biology
Alsayed Algergawy, Ria Stangneth, Tina Heger, Jonathan Jeschke and Birgitta König-Ries
The Semantic Web: ESWC 2020 Satellite Events: poster and demo
4.6.2020
Matching Biodiversity and Ecology Ontologies: Challenges & Evaluation Results
Naouel Karam, Abderrahmane Khiat, Alsayed Algergawy, Melanie Sattler,Claus Weiland, Marco Schmidt
The Knowledge Engineering Review (KER), Vol. 35
https://bit.ly/3cJ3VMb 9.3.2020

2019

Species Association Knowledge Graph Construction - A Demo Paper
Dina Sharafeldeen, Alsayed Algergawy, and Birgitta König-Ries
12th International conference on Semantic Web Applications and Tools in Healthcare and Life Sciences (SWAT4HCLS)
Edinburgh 10.12.2019
Partitioning of BioPortal Ontologies: An Empirical Study
Alsayed Algergawy and Birgitta König-Ries
12th International conference on Semantic Web Applications and Tools in Healthcare and Life Sciences (SWAT4HCLS)
Edinburgh 10.12.2019
Towards Knowledge Graph Construction using Semantic Data Mining
Dina Sharafeldeen, Alsayed Algergawy, Birgitta König-Ries
The 21st International Conference on Information Integration and Web-based Applications & Services (iiWAS2019)
Munich, Germany 3.12.2019
ADOnIS: Managing Critical Zone Research Data Using Semantic Web Technologies
Alsayed Algergawy, Bernd Kampe, Hamdi Hamed, Birgitta König-Ries, and Udo Hahn
The EGU General Assembly
Vienna (Austria) 9.4.2019
Entity Extraction in the Ecological Domain - A practical guide
Vladimir Udovenko and Alsayed Algergawy
Workshop on Big (and Small) Data in Science and Humanities @ BTW_2019
Rostock, Germany 4.3.2019

2018

ADOnIS: An ontology-based information system providing seamless integration of structured and unstructured data
Alsayed Algergawy, Friederike Klan, Erik Faessler, Hamdi Hamed, Bernd Kampe, Birgitta König-Ries and Udo Hahn
11th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2018)
Antwerp, Belgium 3.12.2018
BioOntoVis: An Ontology Visualization Tool
Nassira Achich, Alsayed Algergawy, Bassem Bouaziz and Birgitta König-Ries
21st International Conference on Knowledge Engineering and Knowledge Management- EKAW
Nancy-France 12.11.2018
Research data management in action – demonstrating the full range of features of the BEXIS 2 platform
Roman Gerlach, Andreas Ostrowski, Jitendra Gaikwad and Alsayed Algergawy
ICEI2018 - The 10th International Conference on Ecological Informatics 24.9.2018
A Data Mining Approach for Species Co-occurrence Prediction
Dina Sharafeldeen, Alsayed Algergawy, Birgitta König-Ries
10th International Conference on Ecological Informatics- Translating Ecological Data into Knowledge and Decisions in a Rapidly Changing World.
Jena, Germany 24.9.2018
Combined Features for Content Based Image Retrieval: A Comparative Study
Nora Youssef, Alsayed Algergawy, Ibrahim Moawad and El-Sayed El-Horbaty
4th International Conference on Advanced Intelligent Systems and Informatics (AISI’18)
Egypt 1.9.2018
A Framework for Efficient Matching of Large-Scale Metadata Models
Seham Moawed, Alsayed Algergawy, Amany Sarhan, and Ali Eldosouky
Arabian Journal for Science and Engineering
Springer (https://link.springer.com/journal/13369) 1.7.2018

2017

Ontology Visualization: An Overview
Nassira Achich, Bassem Bouaziz, and Alsayed Algergawy
17th International Conference on Intelligent Systems Design and Applications (ISDA)
Delhi, India 16.12.2017
Why the mapping process in ontology integration deserves attention
Samira Babalou, Alsayed Algergawy, Birgitta König-Ries, and Birger Lantow
The 19th International Conference on Information Integration and Web-based Applications & Services (iiWAS2017)
Slazburg, Austria 4.12.2017
A Particle Swarm-based Approach for Semantic Similarity Computation
Samira Babalou, Alsayed Algergawy, and Birgitta König-Ries
Proceedings of the ODBASE 2017 - The 16th International Conference on Ontologies, DataBases, and Applications of Semantics
Greece 24.10.2017
Integrated Semantic Search on Structured and Unstructured Data in the ADOnIS System
Friederike Klan, Erik Faessler, Alsayed Algergawy, Birgitta König-Ries, and Udo Hahn
Proceedings of the 2nd International Workshop on Semantics for Biodiversity co-located with 16th International Semantic Web Conference (ISWC 2017)
Vienna, Austria 22.9.2017
An Ontology-based Scientific Data Integration Workflow
Samira Babalou, Alsayed Algergawy, and Birgitta König-Ries
Proceedings of the 29th GI-Workshop Grundlagen von Datenbanken,
Blankenburg/Harz, Germany 30.5.2017
Context-Based Web Service Discovery Framework with QoS Considerations
Sara Samir, Amany Sarhan, Alsayed Algergawy
IEEE Eleventh International Conference on Research Challenges in Information Science (RCIS_2017)
Brighton, UK 10.5.2017
A Deep Learning-based Approach for Banana Leaf Diseases Classification
Jihen Amara, Bassem Bouaziz, and Alsayed Algergawy
BTW workshop
Stuttgart 6.3.2017
Accelerating relational database operations using both CPU and GPU co-processor
Esraa Shehab, Alsayed Algergawy, and Amany Sarhan
Computers and Electrical Engineering, 57 (2017) 69–80
Science Direct 1.1.2017

2016

Selecting and Tailoring Ontologies with JOYCE
Erik Fäßler, Friederike Klan, Alsayed Algergawy, Birgitta König-Ries, Udo Hahn
20th International Conference on Knowledge Engineering and Knowledge Management (EKAW)
Bologna, Italy 19.11.2016
A New Metric To Evaluate Ontology Modularization
Alsayed Algergawy, Samira Babalou, Birgitta Konig-Ries
2nd International Workshop on Summarizing and Presenting Entities and Ontologies Co-located with the 13th Extended Semantic Web Conference
Greece 30.5.2016
OAPT: A Tool for Ontology Analysis and Partitioning
Alsayed Algergawy , Samira Babalou, Friederike Klan, Birgitta König-Ries
EDBT: 19th International Conference on Extending Database Technology
France 15.3.2016

2015

SeeCOnt: A New Seeding-Based Clustering Approach for Ontology Matching
Alsayed Algergawy, Samira Babalou, Mohammad J. Kargar and S. Hashem Davarpanah
19th East European Conference on Advances in Databases and Information Systems , ADBIS 2015
Springer 8.9.2015
Fuzzy Inference-Based Ontology Matching Using Upper Ontology
S. Hashem Davarpanah, Alsayed Algergawy, Samira Babalou
New Trends in Databases and Information Systems - ADBIS 2015 Short Papers and Workshops
Springer 8.9.2015
Closing the Gaps in Biodiversity Data Management: What Biodiversity Researchers Seek and Computer Science Can Offer
Friederike Klan, Felicitas Löffler, Jitendra Gaikwad, Roman Gerlach, Alsayed Algergawy, Pawandeep Khaur, Dorothee Wieczorek
45th Annual Meeting of the Ecological Society of Germany, Austria and Switzerland (GFÖ 2015))
Göttingen 31.8.2015
MAG: A performance evaluation framework for database systems
AbdAlhamid Khattab, Alsayed Algergawy, Amany Sarhan
Knowledge-Based Systems
15.5.2015
A sequence-based tree similarity search
Alsayed Algergawy, Friederike Klan
9th IEEE International Conference on Research Challenges in Information Science (RCIS)
Greece 11.5.2015

2014

Improving Clustering-based Schema Matching using Latent Semantic Indexing
Seham Moawed, Amany Sarhan, Ali Eldosouky, and Gunter Saake
Transactions on Large-Scale Data and Knowledge-Centered Systems (TLDKS)
1.10.2014
Partitioning-based Ontology Matching Approaches: A Comparative Analysis
Alsayed Algergawy, Friederike Klan, Birgitta König-Ries
The Ninth International Workshop on Ontology Matching collocated with the 13th International Semantic Web Conference, Riva del Garda, Trentino, Italy 1.10.2014
Aggregation of similarity measures in schema matching based on generalized mean
Faten A Elshwimy, Amany Sarhan, Elsayed A Sallam
2014 IEEE 30th International Conference on Data Engineering Workshops (ICDEW)
1.4.2014

2013

Combining Multiple Features for Web Data Sources Clustering
Alsayed Algergawy, Gunter Saake
IEEE 10th International Conference on e-Business Engineering, ICEBE 2013
Coventry, United Kingdom 1.9.2013
A Latent Semantic Indexing-Based Approach to Determine Similar Clusters in Large-scale Schema Matching
Seham Moawed, Amany Sarhan, Ali Eldosouky, Gunter Saake
17th East European Conference on Advances in Databases and Information Systems, ADBIS 2013 1.9.2013

Talks

2017

Integrated Semantic Search on Structured and Unstructured Data in the ADOnIS System
2nd International Workshop on Semantics for Biodiversity at ISWC 2017
Vienna, Austria 22.10.2017
A Semantic Search Component for BExIS 2
BExIS 2 UserDevConf 2017
Jena, Germany 16.6.2017

2016

Selecting and Tailoring Ontologies with JOYCE
20th International Conference on Knowledge Engineering and Knowledge Management (EKAW)
Bologna, Italy 19.11.2016
A Conceptual Layer on Top of BEXIS 2
BEXIS 2 UserDevConf 2016
Jena 9.6.2016
A User-Centered Upload Workflow for the BEXIS 2 Platform
BEXIS 2 UserDevConf 2016
Jena 9.6.2016

2015

Selecting, Tailoring and Aligning Formal Ontologies for Scientific Knowledge Management in AquaDiva
iDiv Annual Conference
Leipzig 2.12.2015
Selecting, Tailoring and Aligning Formal Ontologies for Scientific Knowledge Management
GfÖ Annual Meeting
Göttingen 31.8.2015

2014

Knowledge Integration and Synthesis Using Semantic Technologies
GfÖ Annual Meeting
Hildesheim 7.9.2014

Supervised Theses

Teaching

Current Projects

AquaDiva D01 - Semantic Technologies for Scientific Data management and Text Mining (SemDaTe)
The Collaborative Research Centre AquaDiva (CRC 1076), funded by the German Research Foundation (DFG), focuses on the important roles of water (Aqua) and biodiversity (Diva) for shaping the structure, properties, and functions of the subsurface. This project aims to answer fundamental questions about the Earth’s Critical Zone (CZ) that begins below the highest density of plant roots (~0.3 meters) and extends down into the first aquifers (~100 meters): What biota live there? How do they interact with and reflect on their environment? and How do they reflect surface properties? In cooperation with the research group of Prof. Dr. Udo Hahn…
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Jena Data Center (JDC)
The Jena Data Center (JDC) at the Friedrich Schiller University Jena is a conglomerate of data repositories belonging to various small to mid-scale biodiversity and ecological projects, that are using BEXIS2 research data management tool. The aim of the data centre is to provide F.A.I.R principles-based data and ensure long-term preservation and availability along with its high-quality descriptive metadata, to facilitate open science and biodiversity conservation. As part of the long-term preservation objective, after the completion of the project tenure, the data centre will integrate the associated BEXIS2 based data repositories within the Jena data centre e-infrastructure so as to ensure the data is available…
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Interactive Argumentation Support for Invasion Biology
Developing a good, new argument is not an easy task. In real-world argumentation scenarios, arguments presented in texts (e.g. scientific publications) often constitute the end result of a long and tedious process. A lot of work on computational argumentation has focused on detecting, analyzing, and aggregating these products of argumentation processes, i.e. argumentative texts. In this project, we adopt a complementary perspective: we aim to develop an argumentation machine that supports users in and during}the argumentation process in a scientific context, enabling them to follow ongoing argumentation in a scientific community and to develop their own arguments. To achieve this ambitious goal, we will focus on a particular phase of the scientific argumentation process, namely the initial phase of claim or hypothesis development. According to Toulmin (1986), the starting point of an argument is a claim, and also data that serves as a basis for the claim. In scientific argumentation, a carefully developed and thought-through hypothesis (which we see as Toulmin’s “claim” in a scientific context) is often crucial for researchers to be able to conduct a successful study and, in the end, present a new, high-quality finding or argument. Thus, an initial hypothesis needs to be specific enough that a researcher can test it based on data, but, at the same time, it should also relate to and extend previous general claims made in the community. In this project, we investigate how argumentation machines can (i) represent concrete and more abstract knowledge on hypotheses and their underlying concepts, (ii) automatically compute semantic relations between hypotheses made in scientific publications, and between hypotheses and datasets, and (iii) interactively support a user in developing her own hypothesis based on these resources.
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Completed Projects

BioDialog: Intercultural Dialog through Biodiversity Informatics
Ein Kooperationsprojekt der Universität Jena mit der Assiut University und der Ain Shams University, Ägypten und der Sfax University, Tunesien This project serves to prepare a more ambitious three-year project aiming to bring together two vital topics: data management on the one hand and biodiversity research on the other hand. The BioDialog project has the following main objectives: It aims firstly, to establish a scientific exchange, founded on regional expertise which allows understanding biodiversity and biodiversity informatics practices in their specific local context. Biodiversity and biodiversity informatics are common phenomena. However, they have different effects in different contexts which cannot…
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