FUSION
FUnctionality Sharing In Open eNvironments
Heinz Nixdorf Chair for Distributed Information Systems

A deep learning-based approach for segmenting and counting reproductive organs from digitized herbarium specimen images using refined Mask Scoring R-CNN

Abdelaziz Triki, Bassem Bouaziz, Jitendra Gaikwad and Walid Mahdi
Tunisian-Algerian Joint Conference on Applied Computing (TACC 2021), Tunisia, 2021-12-18

PhenoDeep: A Deep Learning-Based Approach for Detecting Reproductive Organs from Digitized Herbarium Specimen Images

Abdelaziz Triki, Bassem Bouaziz, Jitendra Gaikwad, and Walid Mahdi
Proceedings of the International Conference on Neural Information Processing (ICONIP 2021): Lecture Notes in Computer Science, 2021-12-06

Results of the Ontology Alignment Evaluation Initiative 2021

Mina Abd Nikooie Pour, Alsayed Algergawy, Florence Amardeilh, Reihaneh Amini, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Ian Harrow, Sven Hertling, Pascal Hitzler, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Franck Michel, Engy Nasr, Heiko Paulheim, Catia Pesquita, Jan Portisch, Catherine Roussey, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou:
OM@ISWC 2021, 2021-12-01

BEXIS2: A FAIR-aligned data management system for biodiversity, ecology and environmental data

Javad Chamanara, Jitendra Gaikwad, Roman Gerlach, Alsayed Algergawy, Andreas Ostrowski and Birgitta König-Ries
Biodiversity Data Journal, 2021-11-05

Towards Tracking Provenance from Machine Learning Notebooks

Dominik Kerzel, Sheeba Samuel, Birgitta König-Ries
13th International Conference on Knowledge Discovery and Information Retrieval (KDIR), 2021-10-25

ISTMINER: Interactive Spatiotemporal Co-occurrence Pattern Extraction: A Biodiversity case study

Dina Sharafeldeen, Mohamed Bakli, Alsayed Algergawy and Birgitta König-Ries
Computer Science for Biodiversity (CS4BioDiversity) Workshop at INFORMATIK2021, 2021-09-27

Capturing and Semantically Describing Provenance to Tell the Story of R Scripts

Maria Luiza Mondelli, Sheeba Samuel, Birgitta König-Ries, Luiz M. R. Gadelha Jr.
ReWords, co-located with 17th IEEE e-Science 2021, 2021-09-27

A Data-driven Approach for Core Biodiversity Ontology Development.

Nora Abdelmageed, Alsayed Algergawy, Sheeba Samuel, Birgitta König-Ries
Third International Workshop on Semantics for Biodiversity, co-located with ICBO, 2021, 2021-09-15

[Dai:Si] – A Modular Dataset Retrieval Framework with a Semantic Search for Biological Data

Fateme Shafiei, Felicitas Löffler, Sven Thiel, Kobkaew Opasjumruskit, Denis Grabiger, Pauline Rauh and Birgitta König-Ries
3rd International Workshop on Semantics for Biodiversity (S4BioDiv), Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), and the 12th International Conference on Biomedical Ontologies (ICBO 2021), Bolzano, Italy, 2021-09-15

Towards an Ontology Network for the reproducibility of scientific studies

Sheeba Samuel, Alsayed Algergawy, Birgitta König-Ries
JOWO Workshops 2021, 2021-09-13

Deep leaf: Mask R-CNN based leaf detection and segmentation from digitized herbarium specimen images

Abdelaziz Triki, Bassem Bouaziz, Jitendra Gaikwad, and Walid Mahdi
Pattern Recognition Letters, 2021-07-21

ReproduceMeGit: A Visualization Tool for Analyzing Reproducibility of Jupyter Notebooks

Sheeba Samuel and Birgitta König-Ries
Provenance Week 2021, Provenance and Annotation of Data and Processes - 8th and 9th International Provenance and Annotation Workshop, IPAW 2020 + IPAW 2021, Virtual Event, July 19-22, 2021, 2021-07-19

Machine Learning Pipelines: Provenance, Reproducibility and FAIR Data Principles.

Sheeba Samuel, Frank Löffler, Birgitta König-Rie
Provenance Week 2021, Provenance and Annotation of Data and Processes - 8th and 9th International Provenance and Annotation Workshop, IPAW 2020 + IPAW 2021, Virtual Event, July 19-22, 2021, 2021-07-19

Comprehensive leaf size traits dataset for seven plant species from digitised herbarium specimen images covering more than two centuries

Vamsi Krishna Kommineni, Susanne Tautenhahn, Pramod Baddam, Jitendra Gaikwad, Barbara Wieczorek, Abdelaziz Triki, Jens Kattge
Biodiversity Data Journal , 2021-07-13

Towards Scientific Data Synthesis Using Deep Learning and Semantic Web

Alsayed Algergawy, Hamdi Hamed, Birgitta Koenig-Ries
The Semantic Web: ESWC 2021 Satellite Events: poster and demo, 2021-06-04

BiodivOnto: Towards a Core Ontology for Biodiversity

Nora Abdelmageed, Alsayed Algergawy, Sheeba Samuel and Birgitta Koenig-Ries
The Semantic Web: ESWC 2021 Satellite Events: poster and demo, 2021-06-04

A Test Collection for Dataset Retrieval in Biodiversity Research

Felicitas Löffler, Andreas Schuldt, Birgitta König-Ries, Helge Bruelheide, Friederike Klan
RIO - Research Ideas and Outcomes, 2021-05-26

Building high-quality merged ontologies from multiple sources with requirements customization

Samira Babalou
Friedrich-Schiller-Universität Jena, 2021-04-15

Dataset search in biodiversity research: Do metadata in data repositories reflect scholarly information needs?

Felicitas Löffler, Valentin Wesp, Birgitta König-Ries, Friederike Klan
PlosONE, 2021-03-24